Browsing by Autor "Bernard Hugueny"

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Beta diversity facets of Amazonian fishes are explained by dispersal limitation, environmental filtering and historical contingencies
(2025) Murilo S. Dias; Céline Jezequel; Bernard Hugueny; Fabien Leprieur; Sébastien Brosse; James S. Albert; Fernanda A. S. Cassemiro; Renata G. Frederico; Max Hidalgo; Hernán Ortega
Identifying the main taxonomic, phylogenetic and trait dimensions of beta diversity, and evaluating their prospective drivers, advances our understanding of patterns and processes involved in the evolution of biological assemblages. Using comprehensiv
Detecting natural hybridization between two vulnerable Andean pupfishes (Orestias agassizii and O. luteus) representative of the Altiplano endemic fisheries
(Springer Science+Business Media, 2015) Yareli Esquer-Garrigos; Bernard Hugueny; Carla Ibañez; Claudia Zepita; Kellie Koerner; Josie Lambourdière; Arnaud Couloux; Philippe Gaubert
Dietary-morphological relationships in fish assemblages of small forested streams in the Bolivian Amazon
(EDP Sciences, 2007) Carla Ibañez; Pablo A. Tedesco; Rémy Bigorne; Bernard Hugueny; Marc Pouilly; Claudia Zepita; José Zubieta; Thierry Oberdorff
We explored the relationships between diet and morphology in 30 fish species from forested tropical streams of the Bolivian Amazon. These species were first assigned to eight broad trophic guilds based on stomach contents analysis. The relationships between diet and morphology were then examined using Redundancy Analysis, after having checked for potential phylogenetical effects. Results show that, independently of any phylogenetic constraints, some of the trophic guilds could be grossly predicted from few relevant morphological attributes (i.e. relative intestinal length, standard length and mouth orientation) and thus suggest a significant link between diet and morphology. In other words, species having similar diet tend to converge to some extent on some morphological attributes. This link was nevertheless rather weak, suggesting that even if morphology may set limits to patterns of resource use, these limits are broad enough to allow fishes changing their choice of prey resources to respond to local biotic and/or abiotic conditions.
Evidence of history in explaining diversity patterns in tropical riverine fish
(Wiley, 2005) Pablo A. Tedesco; Thierry Oberdorff; Carlos A. Lasso; Milton Zapata; Bernard Hugueny
Abstract Aim Documentation of the ongoing effect of rain forest refuges at the last glacial maximum (LGM) on patterns of tropical freshwater fish diversity. Location Tropical South and Central America, and West Africa. Methods LGM rain forest regions and species richness by drainage were compiled from published data. GIS mapping was applied to compile drainage area and contemporary primary productivity. We used multiple regression analyses, applied separately for Tropical South America, Central America and West Africa, to assess differences in species richness between drainages that were connected and disconnected to rain forest refuge zones during the LGM. Spatial autocorrelation of the residuals was tested using Moran's I statistic. We added an intercontinental comparison to our analyses to see if a historical signal would persist even when a regional historical effect (climate at the LGM) had already been accounted for. Results Both area and history (contact with LGM rain forest refuge) explained the greatest proportions of variance in the geographical pattern of riverine species richness. In the three examined regions, we found highest richness in drainages that were connected to the rain forest refuges. No significant residual spatial autocorrelation was detected after considering area, primary productivity and LGM rain forest refuges. These results show that past climatic events still affect West African and Latin American regional and continental freshwater fish richness. At the continental scale, we found South American rivers more species‐rich than expected on the basis of their area, productivity and connectedness to rain forest refuge. Conversely, Central American rivers were less species‐diverse than expected by the grouped model. African rivers were intermediate. Therefore, a historical signal persists even when a regional historical effect (climate at the LGM) had already been accounted for. Main conclusions It has been hypothesized that past climatic events have limited impact on species richness because species have tracked environmental changes through range shifts. However, when considering organisms with physically constrained dispersal (such as freshwater fish), past events leave a perceptible imprint on present species diversity. Furthermore, we considered regions that have comparable contemporary climatic and environmental characteristics, explaining the absence of a productivity effect. From the LGM to the present day (a time scale of 18,000 years), extinction processes should have played a predominant role in shaping the current diversity pattern. By contrast, the continental effects could reflect historical contingencies explained by differences in speciation and extinction rates between continents at higher time scales (millions of years).
Local-scale species–energy relationships in fish assemblages of some forested streams of the Bolivian Amazon
(Elsevier BV, 2007) Pablo A. Tedesco; Carla Ibañez; Nabor Moya; Rémy Bigorne; Jimena Camacho; Edgar Goïtia; Bernard Hugueny; Mabel Maldonado; Mirtha Rivero; Sylvie Tomanová
Productivity (trophic energy) is one of the most important factors promoting variation in species richness. A variety of species–energy relationships have been reported, including monotonically positive, monotonically negative, or unimodal (i.e. hump-shaped). The exact form of the relationship seems to depend, among other things, on the spatial scale involved. However, the mechanisms behind these patterns are still largely unresolved, although many hypotheses have been suggested. Here we report a case of local-scale positive species–energy relationship. Using 14 local fish assemblages in tropical forested headwater streams (Bolivia), and after controlling for major local abiotic factors usually acting on assemblage richness and structure, we show that rising energy availability through leaf litter decomposition rates allows trophically specialized species to maintain viable populations and thereby to increase assemblage species richness. By deriving predictions from three popular mechanistic explanations, i.e. the ‘increased population size’, the ‘consumer pressure’, and the ‘specialization’ hypotheses, our data provide only equivocal support for the latter.
Non-invasive ancient DNA protocol for fluid-preserved specimens and phylogenetic systematics of the genus <i>Orestias</i> (Teleostei: Cyprinodontidae)
(Q15088586, 2013) Yareli Esquer Garrigos; Bernard Hugueny; Kellie Koerner; Carla Ibañez; Céline Bonillo; Patrice Pruvost; Romain Causse; Corinne Cruaud; Philippe Gaubert
Specimens stored in museum collections represent a crucial source of morphological and genetic information, notably for taxonomically problematic groups and extinct taxa. Although fluid-preserved specimens of groups such as teleosts may constitute an almost infinite source of DNA, few ancient DNA protocols have been applied to such material. In this study, we describe a non-invasive Guanidine-based (GuSCN) ancient DNA extraction protocol adapted to fluid-preserved specimens that we use to re-assess the systematics of the genus Orestias (Cyprinodontidae: Teleostei). The latter regroups pupfishes endemic to the inter-Andean basin that have been considered as a 'species flock', and for which the morphology-based taxonomic delimitations have been hotly debated. We extracted DNA from the type specimens of Orestias kept at the Muséum National d'Histoire Naturelle of Paris, France, including the extinct species O. cuvieri. We then built the first molecular (control region [CR] and rhodopsin [RH]) phylogeny including historical and recently collected representatives of all the Orestias complexes as recognized by Parenti (1984a): agassizii, cuvieri, gilsoni and mulleri. Our ancient DNA extraction protocol was validated after PCR amplification through an approach based on fragment-by-fragment chimera detection. After optimization, we were able to amplify < 200 bp fragments from both mitochondrial and nuclear DNA (CR and RH, respectively) from probably formalin-fixed type specimens bathed entirely in the extraction fluid. Most of the individuals exhibited few modifications of their external structures after GuSCN bath. Our approach combining type material and 'fresh' specimens allowed us to taxonomically delineate four clades recovered from the well-resolved CR tree into four redefined complexes: agassizii (sensu stricto, i.e. excluding luteus-like species), luteus, cuvieri and gilsoni. The mulleri complex is polyphyletic. Our phylogenetic analyses based on both mitochondrial and nuclear DNA revealed a main, deep dichotomy within the genus Orestias, separating the agassizii complex from a clade grouped under shallow dichotomies as (luteus, (cuvieri, gilsoni)). This 'deep and shallow' diversification pattern could fit within a scenario of ancient divergence between the agassizii complex and the rest of Orestias, followed by a recent diversification or adaptive radiation within each complex during the Pleistocene, in- and outside the Lake Titicaca. We could not recover the reciprocal monophyly of any of the 15 species or morphotypes that were considered in our analyses, possibly due to incomplete lineage sorting and/or hybridization events. As a consequence, our results starkly question the delineation of a series of diagnostic characters listed in the literature for Orestias. Although not included in our phylogenetic analysis, the syntype of O. jussiei could not be assigned to the agassizii complex as newly defined. The CR sequence of the extinct O. cuvieri was recovered within the cuvieri clade (same haplotype as one representative of O. pentlandii), so the mtDNA of the former species might still be represented in the wild.