Browsing by Autor "Thomas Borsch"

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A nearly complete genus-level phylogeny of the Amaranthaceae s.str. and a new tribal classification
(Botanic Garden and Botanical Museum Berlin, 2026) Thomas Borsch; Hilda Flores Olvera; Vanessa Di Vincenzo; Teresa Ortuño Limarino; Melaku Wondafrash; Sebsebe Demissew; Kai Müller
Generic concepts and species diversity within the Gynoxyoid clade (Senecioneae, Compositae)
(Pensoft Publishers, 2023) Belen Escobari; Thomas Borsch; Norbert Kilian
The Gynoxyoid clade of the Senecioneae (Asteraceae) until now included the five genera Aequatorium, Gynoxys, Nordenstamia, Paracalia and Paragynoxys as diagnosed using selected morphological characters. In their pre-phylogenetic circumscription, the genera Aequatorium and Paragynoxys were considered to inhabit the northern Andes in contrast to Nordenstamia and Paracalia that occur in the central Andes. The most species-rich genus, Gynoxys, was believed to be distributed throughout the Andes. We use a recently established plastid phylogenomic framework that rendered Gynoxys paraphyletic to further evaluate the delimitation of genera in the Gynoxyoid clade. We examine the morphological variation of all members of the Gynoxyoid to identify characters potentially informative at genus level. This results in a matrix of eleven, mostly multistate characters, including those originally used to diagnose these genera. The ancestral character state inference displays a high level of homoplasy, but nevertheless supports the recognition of four genera. Aequatorium is characterised by white radiate capitula. Paracalia and Paragynoxys share white flowers and floral characteristics, such as flower opening and length of disc flowers lobes, as plesiomorphic states, but differ in habit (scandent shrubs vs. trees). Paracalia also retained white flowers, but its two species are characterised by the absence of outer phyllaries. The genera Gynoxys and Nordenstamia comprise species with yellow capitula which appear to be a derived feature in the Gynoxyoids. The genus Nordenstamia, with eight species, is synonymised under Gynoxys since molecular evidence shows its species nested within various parts of the Gynoxys subclade and the morphological variation of Nordenstamia falls well within that of Gynoxys. With the goal to assign all species to four genera (Aequatorium, Gynoxys, Paracalia and Paragynoxys), we assess the states for the eleven characters for all members of the Gynoxyoids and generate new ETS and ITS sequences for 171 specimens belonging to 49 species to further support their generic placement. We provide a taxonomic treatment for the four genera recognised here including amended diagnoses and morphological descriptions. Furthermore, a species-level taxonomic backbone is elaborated for all genera using electronic tools that list 158 currently accepted names and synonyms (209 names in total) with the respective protologue and type information, as well as notes on the current understanding of species limits. Eleven names are newly synonymised, two are lectotypified and eight are newly transferred to other genera.
Pinguicula chuquisacensis (Lentibulariaceae), a new species from the Bolivian Andes, and first insights on phylogenetic relationships among South American Pinguicula
(Botanic Garden and Botanical Museum Berlin, 2008) Stephan Beck; Andreas Fleischmann; Hibert Huaylla; Kai Müller; Thomas Borsch
Beck, S. G., Fleischmann, A., Huaylla, H., Müller, K. F. & Borsch, T.: Pinguicula chuquisacensis (Lentibulariaceae), a new species from the Bolivian Andes, and first insights on phylogenetic relationships among South American Pinguicula. — Willdenowia 38: 201–212. — ISSN 0511-9618; © 2008 BGBM Berlin-Dahlem. doi:10.3372/wi.38.38115 (available via http://dx.doi.org/)Pinguicula chuquisacensis is described and illustrated as a new species from the department of Chuquisaca of Bolivia. Data on distribution, ecology and a key for identification among other central Andean species are given. DNA sequence data are presented for this new taxon and related Andean species of Pinguicula for the first time. The plastid tree reveals a lineage of central Andean species (within the clade of tropical growth type species), whereas the northern Andean (Colombia, Venezuela) P. elongata appears distantly related and sister to all remaining taxa of the Mexican-Central American-Caribbean clade of Pinguicula.
Plastid phylogenomics of the Gynoxoid group (Senecioneae, Asteraceae) highlights the importance of motif‐based sequence alignment amid low genetic distances
(Wiley, 2021) Belen Escobari; Thomas Borsch; Taylor Sultan Quedensley; Michael Gruenstaeudl
The concatenation and combined analysis of all plastid genome partitions and the construction of manually-curated, motif-based DNA sequence alignments are found to be instrumental in the recovery of well-supported relationships of the Gynoxoid group. We demonstrate that the correct assessment of homology in genome-level plastid sequence data sets is crucial for subsequent phylogeny reconstruction and that the manual post-processing of multiple sequence alignments improves the reliability of such reconstructions amid low genetic distances between taxa.
Plastid phylogenomics of the Gynoxoid group (Senecioneae, Asteraceae) highlights the importance of motif-based sequence alignment amid low genetic distances
(2021) Belen Escobari; Thomas Borsch; Taylor Sultan Quedensley; Michael Gruenstaeudl
ABSTRACT PREMISE The genus Gynoxys and relatives form a species-rich lineage of Andean shrubs and trees with low genetic distances within the sunflower subtribe Tussilaginineae. Previous molecular phylogenetic investigations of the Tussilaginineae have included few, if any, representatives of this Gynoxoid group or reconstructed ambiguous patterns of relationships for it. METHODS We sequenced complete plastid genomes of 21 species of the Gynoxoid group and related Tussilaginineae and conducted detailed comparisons of the phylogenetic relationships supported by the gene, intron, and intergenic spacer partitions of these genomes. We also evaluated the impact of manual, motif-based adjustments of automatic DNA sequence alignments on phylogenetic tree inference. RESULTS Our results indicate that the inclusion of all plastid genome partitions is needed to infer fully resolved phylogenetic trees of the Gynoxoid group. Whole plastome-based tree inference suggests that the genera Gynoxys and Nordenstamia are polyphyletic and form the core clade of the Gynoxoid group. This clade is sister to a clade of Aequatorium and Paragynoxys and also includes some but not all representatives of Paracalia . CONCLUSIONS The concatenation and combined analysis of all plastid genome partitions and the construction of manually curated, motif-based DNA sequence alignments are found to be instrumental in the recovery of strongly supported relationships of the Gynoxoid group. We demonstrate that the correct assessment of homology in genome-level plastid sequence datasets is crucial for subsequent phylogeny reconstruction and that the manual post-processing of multiple sequence alignments improves the reliability of such reconstructions amid low genetic distances between taxa.
Towards a species level tree of the globally diverse genus Chenopodium (Chenopodiaceae)
(Elsevier BV, 2011) Susy Fuentes-Bazán; Guilhem Mansion; Thomas Borsch